STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCJ51295.1Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (732 aa)    
Predicted Functional Partners:
OCJ51296.1
Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
OCJ51311.1
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
OCJ51312.1
Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.987
OCJ55219.1
Xanthine dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.950
OCJ51298.1
XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.845
OCJ51299.1
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.826
OCJ51626.1
XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.815
OCJ55214.1
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
 
 0.763
ade
Adenine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
 
  
  0.751
ade-2
Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
 
  
  0.750
Your Current Organism:
Agrobacterium rubi
NCBI taxonomy Id: 28099
Other names: A. rubi, ATCC 13335, Agrobacterium genomic group 11, Agrobacterium genomic species 11, Agrobacterium genomosp. 11, Agrobacterium tumefaciens genomovar G11, CFBP 5509, CFBP 6448, CIP 104332, DSM 6772, ICMP 11833, ICMP 6428, IFO 13261, JCM 20918, LMG 156, LMG 17935, LMG:156, LMG:17935, NBRC 13261, Phytomonas rubi, Rhizobium rubi
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