STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCJ44800.1P-type conjugative transfer ATPase TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)    
Predicted Functional Partners:
OCJ44801.1
Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.956
OCJ44803.1
Conjugal transfer protein TrbE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.954
OCJ44802.1
Conjugal transfer protein TrbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.947
OCJ44804.1
P-type conjugative transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.940
OCJ48696.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.871
OCJ53811.1
P-type conjugative transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.831
OCJ50993.1
P-type conjugative transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.830
A6U92_16315
P-type conjugative transfer protein TrbL; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.825
OCJ50994.1
Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.824
OCJ53810.1
Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.824
Your Current Organism:
Agrobacterium rubi
NCBI taxonomy Id: 28099
Other names: A. rubi, ATCC 13335, Agrobacterium genomic group 11, Agrobacterium genomic species 11, Agrobacterium genomosp. 11, Agrobacterium tumefaciens genomovar G11, CFBP 5509, CFBP 6448, CIP 104332, DSM 6772, ICMP 11833, ICMP 6428, IFO 13261, JCM 20918, LMG 156, LMG 17935, LMG:156, LMG:17935, NBRC 13261, Phytomonas rubi, Rhizobium rubi
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