STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCJ43753.1AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)    
Predicted Functional Partners:
OCJ43615.1
Ornithine cyclodeaminase; Catalyzes the formation of L-proline from L-ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.839
OCJ43614.1
Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.
 
     0.779
OCJ55895.1
uroporphyrinogen-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
  
 
 0.760
OCJ55246.1
Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.697
OCJ51458.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.595
OCJ43613.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.578
OCJ54641.1
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.535
OCJ43118.1
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.488
OCJ55317.1
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
Your Current Organism:
Agrobacterium rubi
NCBI taxonomy Id: 28099
Other names: A. rubi, ATCC 13335, Agrobacterium genomic group 11, Agrobacterium genomic species 11, Agrobacterium genomosp. 11, Agrobacterium tumefaciens genomovar G11, CFBP 5509, CFBP 6448, CIP 104332, DSM 6772, ICMP 11833, ICMP 6428, IFO 13261, JCM 20918, LMG 156, LMG 17935, LMG:156, LMG:17935, NBRC 13261, Phytomonas rubi, Rhizobium rubi
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