STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCJ53765.1Type IV secretion system protein VirB5; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)    
Predicted Functional Partners:
OCJ53763.1
Type IV secretion system protein VirB3; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.743
OCJ53761.1
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.742
OCJ53762.1
Type IV secretion system protein VirB2; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.738
OCJ53764.1
Type IV secretion system protein VirB4; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.735
OCJ53857.1
Type IV secretion system protein VirB6; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.538
Your Current Organism:
Agrobacterium rubi
NCBI taxonomy Id: 28099
Other names: A. rubi, ATCC 13335, Agrobacterium genomic group 11, Agrobacterium genomic species 11, Agrobacterium genomosp. 11, Agrobacterium tumefaciens genomovar G11, CFBP 5509, CFBP 6448, CIP 104332, DSM 6772, ICMP 11833, ICMP 6428, IFO 13261, JCM 20918, LMG 156, LMG 17935, LMG:156, LMG:17935, NBRC 13261, Phytomonas rubi, Rhizobium rubi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.