STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN10579.1Divalent cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)    
Predicted Functional Partners:
AMN13410.1
Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.551
sodB
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.544
AMN11322.1
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.534
AMN13439.1
Siderophore utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.502
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
  
    0.489
AMN12206.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
pepQ
Proline dipeptidase; Splits dipeptides with a prolyl residue in the C-terminal position.
       0.461
AMN12901.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.424
AMN12866.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.419
AMN13451.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.418
Your Current Organism:
Alteromonas macleodii
NCBI taxonomy Id: 28108
Other names: A. macleodii, ATCC 27126, Alteromonas sp. F12, CCUG 16128, CIP 103198, DSM 6062, JCM 20772, LMG 2843, LMG:2843, NBRC 102226, Pseudoalteromonas macleodii
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