STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN12081.1Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)    
Predicted Functional Partners:
AMN10745.1
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.711
AMN12080.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.697
AMN12083.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.681
AMN12082.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.635
AMN12465.1
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.578
AMN13168.1
Iduronate sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.566
AMN12410.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.553
fabD
Malonyl CoA-ACP transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.528
AMN12464.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.505
AMN12084.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.498
Your Current Organism:
Alteromonas macleodii
NCBI taxonomy Id: 28108
Other names: A. macleodii, ATCC 27126, Alteromonas sp. F12, CCUG 16128, CIP 103198, DSM 6062, JCM 20772, LMG 2843, LMG:2843, NBRC 102226, Pseudoalteromonas macleodii
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