STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betACholine dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (550 aa)    
Predicted Functional Partners:
AMN12600.1
Betaine-aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.
 
 0.984
alkJ
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.909
AMN12354.1
Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.909
betI
BetI family transcriptional regulator; Repressor involved in choline regulation of the bet genes.
 
  
 0.854
AMN12482.1
Phospholipase; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
  
  
  0.828
AMN12977.1
Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.805
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
  0.800
AMN12332.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.800
AMN12602.1
Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.786
AMN13117.1
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.744
Your Current Organism:
Alteromonas macleodii
NCBI taxonomy Id: 28108
Other names: A. macleodii, ATCC 27126, Alteromonas sp. F12, CCUG 16128, CIP 103198, DSM 6062, JCM 20772, LMG 2843, LMG:2843, NBRC 102226, Pseudoalteromonas macleodii
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