STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN13381.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)    
Predicted Functional Partners:
AMN13383.1
RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.851
AMN13382.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.771
AMN12071.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
AMN10261.1
Proline hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.614
AMN13095.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.602
AMN11595.1
Invasin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.579
AMN11188.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.533
AMN13006.1
Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.527
AMN13384.1
Sulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
AMN13256.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
Your Current Organism:
Alteromonas macleodii
NCBI taxonomy Id: 28108
Other names: A. macleodii, ATCC 27126, Alteromonas sp. F12, CCUG 16128, CIP 103198, DSM 6062, JCM 20772, LMG 2843, LMG:2843, NBRC 102226, Pseudoalteromonas macleodii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.