STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhaCNa+/H+ antiporter; Identified by sequence similarity. (490 aa)    
Predicted Functional Partners:
dapA
Dihydrodipicolinate synthase; Identified by sequence similarity; Belongs to the DapA family.
 
   
 0.735
Lxx10290
Transcriptional regulator; Identified by sequence similarity.
 
     0.603
Lxx10300
Hypothetical protein.
       0.454
poaA
Proline dehydrogenase; Identified by sequence similarity; Belongs to the aldehyde dehydrogenase family.
  
    0.412
Lxx21080
N-acetyl-glucosamine transferase; Identified by sequence similarity.
  
     0.409
Lxx06600
PTS system, fructose-specific permease, transmembrane protein; Identified by sequence similarity.
     
 0.404
Lxx14024
N-acetyl-glucosamine transferase; Identified by sequence similarity.
  
     0.404
Your Current Organism:
Leifsonia xyli CTCB07
NCBI taxonomy Id: 281090
Other names: L. xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli CTCB07, Leifsonia xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli strain CTCB07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.