STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lxx15060Conserved hypothetical protein; Identified by sequence similarity; Belongs to the HesB/IscA family. (118 aa)    
Predicted Functional Partners:
nifU
NifU homolog; Identified by sequence similarity.
  
  
 0.805
Lxx18340
Conserved hypothetical protein; Identified by sequence similarity; Belongs to the GcvT family.
 
 
 0.701
Lxx15080
Peptidase; Identified by sequence similarity.
       0.700
ctaC
Cytochrome C oxidase subunit II; Identified by sequence similarity.
 
    0.681
Lxx21000
Conserved hypothetical protein; Identified by sequence similarity.
  
 
 0.651
nifS
Cysteine desulfurase; Identified by sequence similarity.
 
  
 0.644
iscS
Cysteine desulfurase; Identified by sequence similarity.
 
  
 0.636
sucA
2-oxoglutarate dehydrogenase; Identified by sequence similarity.
  
   
 0.618
Lxx15070
Conserved hypothetical protein; Identified by sequence similarity.
       0.592
ctaD
Cytochrome C oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
       0.555
Your Current Organism:
Leifsonia xyli CTCB07
NCBI taxonomy Id: 281090
Other names: L. xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli CTCB07, Leifsonia xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli strain CTCB07
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.