STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtEbLycopene elongase; Identified by sequence similarity. (291 aa)    
Predicted Functional Partners:
crtYe
C50 carotenoid epsilon cyclase; Identified by sequence similarity.
 
  
 0.992
lctB
Lycopene e-cyclase isoprenoid transferase B; Identified by sequence similarity.
 
   
 0.990
crtI
Phytoene dehydrogenase; Identified by sequence similarity.
 
  
 0.981
crtB
Phytoene synthase; Identified by sequence similarity.
 
  
 0.981
crtE
Geranylgeranyl pyrophosphate synthase; Identified by sequence similarity; Belongs to the FPP/GGPP synthase family.
 
  
 0.952
idi
Isopentenyldiphosphate isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
 
 0.911
Lxx15640
Transcriptional regulator, MarR family; Identified by sequence similarity.
 
     0.684
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
 
    0.431
Lxx18460
Membrane protein; Identified by sequence similarity.
  
     0.418
atpD
ATP synthase, beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
  0.400
Your Current Organism:
Leifsonia xyli CTCB07
NCBI taxonomy Id: 281090
Other names: L. xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli CTCB07, Leifsonia xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli strain CTCB07
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.