STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lxx18820ABC transporter, ATP-binding protein; Identified by sequence similarity. (173 aa)    
Predicted Functional Partners:
Lxx18830
Hypothetical protein.
       0.773
Lxx22040
Conserved hypothetical protein; Identified by sequence similarity.
 
 
 0.730
Lxx14520
ABC transporter, permease protein; Identified by sequence similarity.
 
   0.691
oppF
Oligopeptide porter; Identified by sequence similarity.
  
     0.674
Lxx03110
Integral membrane protein; Identified by sequence similarity.
  
   0.634
natA
ABC transporter, ATP-binding protein; Identified by sequence similarity.
  
     0.574
aspS
aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.
  
     0.562
natA-2
ABC transporter, ATP-binding protein; Identified by sequence similarity.
  
     0.548
Lxx17710
Hypothetical protein.
 
      0.460
hisS
histidyl-tRNA synthetase; Identified by sequence similarity.
  
   
 0.452
Your Current Organism:
Leifsonia xyli CTCB07
NCBI taxonomy Id: 281090
Other names: L. xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli CTCB07, Leifsonia xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli strain CTCB07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.