STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KU46_255PAP2 superfamily protein. (212 aa)    
Predicted Functional Partners:
KU46_1140
AMP-binding enzyme family protein.
   
 0.577
KU46_252
Serine dehydratase alpha chain family protein; Belongs to the UPF0597 family.
       0.554
KU46_253
N-acetylmuramoyl-L-alanine amidase family protein.
  
    0.554
KU46_1573
Hypothetical protein.
  
     0.527
KU46_167
Zinc-binding dehydrogenase family protein.
  
 
 0.482
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.464
KU46_1128
Cytochrome P450 family protein.
    
  0.431
KU46_163
Cytochrome P450 family protein.
    
  0.431
KU46_1022
Major Facilitator Superfamily protein.
  
     0.425
Your Current Organism:
Francisella philomiragia
NCBI taxonomy Id: 28110
Other names: ATCC 25015, CCUG 19700, CCUG 4992, CIP 82.98, DSM 7535, F. philomiragia, Francisella philomiragia subsp. philomiragia, Yersinia philomiragia, strain O#319L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.