STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspDAsp_4_decarbox: aspartate 4-decarboxylase. (526 aa)    
Predicted Functional Partners:
aspT
asp_Ala_antiprt: aspartate-alanine antiporter.
 
    0.947
KU46_1064
Asp_kinase: aspartate kinase domain protein; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 0.854
KU46_566
Prephenate dehydrogenase family protein.
    
 0.752
trpF
Indole-3-glycerol phosphate synthase family protein; Belongs to the TrpC family.
    
 0.646
KU46_401
Asp_kinase: aspartate kinase domain protein; Belongs to the aspartokinase family.
  
 0.628
KU46_458
Asp_kinase: aspartate kinase domain protein; Belongs to the aspartokinase family.
  
 0.628
pheA
Prephenate dehydratase family protein.
  
 
  0.590
KU46_877
Permease family protein.
  
    0.585
pabB
pabB: aminodeoxychorismate synthase, component I.
  
 0.584
argF
Orni_carb_tr: ornithine carbamoyltransferase.
    
 0.578
Your Current Organism:
Francisella philomiragia
NCBI taxonomy Id: 28110
Other names: ATCC 25015, CCUG 19700, CCUG 4992, CIP 82.98, DSM 7535, F. philomiragia, Francisella philomiragia subsp. philomiragia, Yersinia philomiragia, strain O#319L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.