Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KU46_899FAD binding domain of DNA photolyase family protein. (509 aa)    
Predicted Functional Partners:
KU46_898
FAD binding domain of DNA photolyase family protein.
 
   
 0.866
KU46_897
Hypothetical protein.
 
     0.842
KU46_896
Short chain dehydrogenase family protein.
 
     0.810
KU46_900
Hypothetical protein.
       0.800
KU46_326
Flavin containing amine oxidoreductase family protein.
 
     0.530
KU46_901
Sodium Bile acid symporter family protein.
       0.492
rimO
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.476
KU46_907
Hypothetical protein.
 
     0.450
KU46_902
Sensory box protein.
       0.405
KU46_97
Short chain dehydrogenase family protein.
 
   
 0.401
Your Current Organism:
Francisella philomiragia
NCBI taxonomy Id: 28110
Other names: ATCC 25015, CCUG 19700, CCUG 4992, CIP 82.98, DSM 7535, F. philomiragia, Francisella philomiragia subsp. philomiragia, Yersinia philomiragia, strain O#319L
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