Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
HQ47_00580Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)    
Predicted Functional Partners:
ydhD
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.875
HQ47_06265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.741
HQ47_03520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.722
HQ47_00295
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.707
HQ47_02895
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.706
HQ47_08805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.691
HQ47_04015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.686
cls
Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
       0.678
HQ47_01995
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.657
HQ47_03515
Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
Your Current Organism:
Porphyromonas macacae
NCBI taxonomy Id: 28115
Other names: ATCC 33141, Bacteroides macacae, Bacteroides melaninogenicus macacae, Bacteroides melaninogenicus subsp. macacae, Bacteroides salivosus, CCUG 47703, DSM 20710, JCM 13914, NCTC 13100, P. macacae, Porphyromonas salivosa, Slots strain 7728-L6C, strain 7728-L6C
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