STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zraR_3ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)    
Predicted Functional Partners:
HQ47_02095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.949
HQ47_08075
Racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.866
HQ47_05195
RNA polymerase sigma54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.837
HQ47_07530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.828
HQ47_03055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.783
HQ47_06120
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.683
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.543
HQ47_02085
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.536
HQ47_02570
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.525
bepF
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.522
Your Current Organism:
Porphyromonas macacae
NCBI taxonomy Id: 28115
Other names: ATCC 33141, Bacteroides macacae, Bacteroides melaninogenicus macacae, Bacteroides melaninogenicus subsp. macacae, Bacteroides salivosus, CCUG 47703, DSM 20710, JCM 13914, NCTC 13100, P. macacae, Porphyromonas salivosa, Slots strain 7728-L6C, strain 7728-L6C
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