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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HQ47_02430Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (890 aa)    
Predicted Functional Partners:
HQ47_02435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.948
HQ47_04530
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.573
HQ47_03890
uroporphyrinogen-III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.513
HQ47_10370
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.506
HQ47_08135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
HQ47_08000
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
HQ47_00065
Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
   0.466
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.466
HQ47_09115
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.466
HQ47_09655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.466
Your Current Organism:
Porphyromonas macacae
NCBI taxonomy Id: 28115
Other names: ATCC 33141, Bacteroides macacae, Bacteroides melaninogenicus macacae, Bacteroides melaninogenicus subsp. macacae, Bacteroides salivosus, CCUG 47703, DSM 20710, JCM 13914, NCTC 13100, P. macacae, Porphyromonas salivosa, Slots strain 7728-L6C, strain 7728-L6C
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