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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HQ47_03260Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family. (1086 aa)    
Predicted Functional Partners:
HQ47_10450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.827
HQ47_08075
Racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.581
HQ47_04710
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.533
HQ47_06200
RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.528
HQ47_04435
RagB/SusD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.505
HQ47_08135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
HQ47_08000
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.461
HQ47_03265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.457
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
   
  0.437
HQ47_05340
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
Your Current Organism:
Porphyromonas macacae
NCBI taxonomy Id: 28115
Other names: ATCC 33141, Bacteroides macacae, Bacteroides melaninogenicus macacae, Bacteroides melaninogenicus subsp. macacae, Bacteroides salivosus, CCUG 47703, DSM 20710, JCM 13914, NCTC 13100, P. macacae, Porphyromonas salivosa, Slots strain 7728-L6C, strain 7728-L6C
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