Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
HQ47_03335HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)    
Predicted Functional Partners:
HQ47_07985
Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.802
HQ47_00755
CRISPR-associated protein Csm1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
HQ47_03565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.772
HQ47_00765
CRISPR-associated protein Cmr4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
HQ47_00775
CRISPR-associated protein Cmr5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
HQ47_05095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.759
HQ47_08245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.756
aaxB
Arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
HQ47_10120
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
HQ47_05750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.742
Your Current Organism:
Porphyromonas macacae
NCBI taxonomy Id: 28115
Other names: ATCC 33141, Bacteroides macacae, Bacteroides melaninogenicus macacae, Bacteroides melaninogenicus subsp. macacae, Bacteroides salivosus, CCUG 47703, DSM 20710, JCM 13914, NCTC 13100, P. macacae, Porphyromonas salivosa, Slots strain 7728-L6C, strain 7728-L6C
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