STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemEUroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (336 aa)    
Predicted Functional Partners:
hemN_1
Oxygen-independent coproporphyrinogen-III oxidase 1.
  
 
 0.921
ALJ44873.1
Vitamin B12 dependent methionine synthase, activation domain.
 
  
 0.909
fcf2
dTDP-fucopyranose mutase.
  
  
 0.818
gltB_1
Ferredoxin-dependent glutamate synthase 1.
     
 0.710
metH_3
Methionine synthase.
  
 0.669
cobN
Aerobic cobaltochelatase subunit CobN.
  
  
 0.652
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
   
  
 0.573
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
      
 0.567
ALJ46679.1
Phosphoenolpyruvate synthase.
     
 0.518
isiB
Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
   
  
 0.498
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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