STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgl_2Polygalacturonase; Belongs to the glycosyl hydrolase 28 family. (450 aa)    
Predicted Functional Partners:
yteR_1
Unsaturated rhamnogalacturonyl hydrolase YteR.
     0.934
pemA_3
Pectinesterase A precursor.
   
 0.872
rhgT_2
Rhamnogalacturonan acetylesterase RhgT.
 
 0.828
rhgT_3
Rhamnogalacturonan acetylesterase RhgT.
   0.821
yteR_7
Unsaturated rhamnogalacturonyl hydrolase YteR.
     0.817
pemA_2
Pectinesterase A precursor.
 
 0.808
rhgT_4
Rhamnogalacturonan acetylesterase RhgT.
   0.801
ALJ45263.1
Hypothetical protein.
   
 0.797
pemA_1
Pectinesterase A precursor.
 
 0.790
pemA_4
Pectinesterase A precursor.
 
 0.790
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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