STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrA_1Multidrug export protein EmrA. (328 aa)    
Predicted Functional Partners:
ALJ45375.1
Outer membrane efflux protein.
 
 0.973
yhhJ
Inner membrane transport permease YhhJ.
  
 0.957
ALJ45372.1
ABC-2 family transporter protein.
    0.944
ALJ48614.1
ABC-2 family transporter protein.
  
 0.808
ALJ48615.1
ABC-2 family transporter protein.
  
 0.804
ALJ47332.1
Ion channel.
 
  
 0.668
bepC_1
Outer membrane efflux protein BepC precursor.
 
 
 0.625
ALJ46196.1
Outer membrane channel protein.
 
 
 0.612
ttgC
Putative efflux pump outer membrane protein TtgC precursor.
 
 
 0.604
emrB
Multidrug export protein EmrB.
  
 
 0.600
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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