Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALJ45390.1 | ftsY | Bovatus_00725 | Bovatus_00726 | Hypothetical protein. | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.676 |
ALJ45390.1 | hup_1 | Bovatus_00725 | Bovatus_00728 | Hypothetical protein. | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | 0.617 |
ALJ45390.1 | ihfA | Bovatus_00725 | Bovatus_00729 | Hypothetical protein. | Integration host factor subunit alpha; Belongs to the bacterial histone-like protein family. | 0.522 |
ALJ45390.1 | rimO | Bovatus_00725 | Bovatus_00727 | Hypothetical protein. | Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.676 |
ALJ45390.1 | rpmB | Bovatus_00725 | Bovatus_00723 | Hypothetical protein. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.880 |
ALJ45390.1 | rpmG2 | Bovatus_00725 | Bovatus_00724 | Hypothetical protein. | 50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family. | 0.899 |
ALJ45396.1 | ftsY | Bovatus_00731 | Bovatus_00726 | Hypothetical protein. | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.402 |
ALJ45396.1 | hup_1 | Bovatus_00731 | Bovatus_00728 | Hypothetical protein. | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | 0.578 |
ALJ45396.1 | ihfA | Bovatus_00731 | Bovatus_00729 | Hypothetical protein. | Integration host factor subunit alpha; Belongs to the bacterial histone-like protein family. | 0.418 |
ALJ45396.1 | ravA_2 | Bovatus_00731 | Bovatus_00730 | Hypothetical protein. | ATPase RavA. | 0.951 |
ALJ46224.1 | hup_1 | Bovatus_01580 | Bovatus_00728 | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | 0.658 |
ALJ48764.1 | hup_1 | Bovatus_04170 | Bovatus_00728 | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | 0.705 |
ftsY | ALJ45390.1 | Bovatus_00726 | Bovatus_00725 | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | Hypothetical protein. | 0.676 |
ftsY | ALJ45396.1 | Bovatus_00726 | Bovatus_00731 | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | Hypothetical protein. | 0.402 |
ftsY | hup_1 | Bovatus_00726 | Bovatus_00728 | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | 0.845 |
ftsY | ihfA | Bovatus_00726 | Bovatus_00729 | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | Integration host factor subunit alpha; Belongs to the bacterial histone-like protein family. | 0.830 |
ftsY | ravA_2 | Bovatus_00726 | Bovatus_00730 | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | ATPase RavA. | 0.636 |
ftsY | rimO | Bovatus_00726 | Bovatus_00727 | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.850 |
ftsY | rpmB | Bovatus_00726 | Bovatus_00723 | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.843 |
ftsY | rpmG2 | Bovatus_00726 | Bovatus_00724 | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family. | 0.852 |
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