STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rssA_2NTE family protein RssA. (765 aa)    
Predicted Functional Partners:
ALJ48569.1
Hypothetical protein.
 
 
 0.773
htpG_1
Chaperone protein HtpG.
  
 
 0.724
clpC
ATP-dependent Clp protease ATP-binding subunit ClpC; Belongs to the ClpA/ClpB family.
   
 
 0.640
ALJ48983.1
Putative assembly protein.
 
  
 0.590
ALJ44832.1
Hypothetical protein.
  
     0.572
bamD
Outer membrane protein assembly factor BamD.
  
 
 0.563
rseP
Putative zinc metalloprotease.
  
  
 0.512
ALJ45314.1
Microbial collagenase precursor.
  
 
 0.505
glpQ1_3
Putative glycerophosphoryl diester phosphodiesterase 1.
  
 
 0.505
bamB
Outer membrane protein assembly factor BamB.
  
 
 0.505
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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