STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhFPutative ABC transporter ATP-binding protein YbhF. (489 aa)    
Predicted Functional Partners:
ybhS
Inner membrane transport permease YbhS.
  
 0.997
ybhR
Inner membrane transport permease YbhR.
  
 0.995
ALJ45816.1
Putative efflux pump membrane fusion protein.
 
  
 0.953
ALJ45817.1
Outer membrane efflux protein.
 
   
 0.942
yhhJ
Inner membrane transport permease YhhJ.
 
  
 0.830
ALJ48614.1
ABC-2 family transporter protein.
 
  
 0.748
ALJ45380.1
ABC-2 family transporter protein.
 
 
 0.692
ALJ45372.1
ABC-2 family transporter protein.
 
  
 0.605
rhaR_2
HTH-type transcriptional activator RhaR.
     
 0.525
ALJ48615.1
ABC-2 family transporter protein.
 
  
 0.495
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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