STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ46280.1Glycyl-glycine endopeptidase ALE-1 precursor. (551 aa)    
Predicted Functional Partners:
pepD_1
Dipeptidase.
       0.797
pgcA
Phosphoglucomutase.
     
 0.630
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.610
ALJ46953.1
Outer membrane channel protein.
  
   
 0.555
ALJ46281.1
Hypothetical protein.
       0.546
ALJ48640.1
Hypothetical protein.
 
    0.542
ALJ49217.1
Hypothetical protein.
 
   
 0.512
ALJ49257.1
Cell division protein ZapA.
 
   
 0.501
ALJ48856.1
Hypothetical protein.
  
     0.491
nlpD_1
Murein hydrolase activator NlpD precursor.
 
   
 0.476
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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