STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ46343.1SusD family protein. (604 aa)    
Predicted Functional Partners:
ALJ46344.1
TonB dependent receptor.
 
     0.933
ALJ49570.1
Hypothetical protein.
  
 
   0.803
ALJ47851.1
TonB dependent receptor.
 
 
   0.778
ALJ49028.1
TonB dependent receptor.
 
 
   0.766
ALJ46405.1
TonB-dependent Receptor Plug Domain protein.
 
 
   0.764
ALJ47874.1
TonB dependent receptor.
 
 
   0.753
ALJ48080.1
TonB dependent receptor.
 
 
   0.753
ALJ45969.1
TonB dependent receptor.
  
     0.749
ALJ45971.1
TonB dependent receptor.
 
     0.747
ALJ48930.1
TonB dependent receptor.
  
     0.746
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.