STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ47172.1Endo-beta-1,4-xylanase Xyn10C precursor. (584 aa)    
Predicted Functional Partners:
ALJ47173.1
Hypothetical protein.
 
     0.925
ALJ47174.1
SusD family protein.
 
     0.892
ALJ47175.1
TonB-dependent Receptor Plug Domain protein.
 
     0.890
ALJ47176.1
SusD family protein.
 
     0.874
ALJ47177.1
TonB-dependent Receptor Plug Domain protein.
 
     0.870
ALJ48329.1
TonB dependent receptor.
 
     0.779
ALJ48331.1
Hypothetical protein.
 
     0.779
ALJ48327.1
TonB dependent receptor.
 
     0.775
ALJ47170.1
Hypothetical protein.
 
     0.774
ALJ48328.1
SusD family protein.
  
     0.771
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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