STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ47431.1Hypothetical protein. (598 aa)    
Predicted Functional Partners:
yfkJ
Low molecular weight protein-tyrosine-phosphatase YfkJ.
       0.732
ALJ48578.1
Beta-N-acetylhexosaminidase.
 
    0.698
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
  
    0.686
nedA_1
Sialidase precursor.
  
 0.664
ALJ48397.1
Beta-N-acetylhexosaminidase.
 
    0.569
ALJ47507.1
Hypothetical protein.
 
  
 0.488
gmuF_2
Putative mannose-6-phosphate isomerase GmuF.
  
     0.474
ALJ47433.1
Hypothetical protein.
  
  
 0.463
emrB
Multidrug export protein EmrB.
  
     0.462
ALJ46568.1
Transcriptional regulator BetI.
  
     0.462
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.