STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigE_4ECF RNA polymerase sigma factor SigE. (191 aa)    
Predicted Functional Partners:
ALJ47436.1
Hypothetical protein.
 
     0.915
sigW_4
ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.768
sigE_5
ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.761
sigR_1
ECF RNA polymerase sigma factor SigR; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.755
ylaC_4
RNA polymerase sigma factor YlaC; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.755
sigE_2
ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.746
carQ_3
RNA polymerase sigma factor CarQ; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.745
sigH_2
ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.742
sigH_3
ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.740
sigR_2
ECF RNA polymerase sigma factor SigR; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.729
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.