ALJ47995.1 protein (Bacteroides ovatus) - STRING interaction network

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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[Homology]

Score

ALJ47995.1

Cellobiose 2-epimerase. (387 aa)

Predicted Functional Partners:

ALJ47994.1

0.764

ALJ47687.1

0.752

ALJ47688.1

0.712

ALJ47689.1

0.705

ALJ46802.1

0.579

ALJ48259.1

0.559

ALJ47616.1

0.552

ALJ44697.1

0.550

ALJ48451.1

0.550

ALJ48228.1

0.526

Your Current Organism:

Bacteroides ovatus

NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALJ44697.1	ALJ47995.1	Bovatus_00025	Bovatus_03388	Heparinase II/III-like protein.	Cellobiose 2-epimerase.	0.550
ALJ46802.1	ALJ47687.1	Bovatus_02168	Bovatus_03079	SusD family protein.	Hypothetical protein.	0.514
ALJ46802.1	ALJ47689.1	Bovatus_02168	Bovatus_03081	SusD family protein.	TonB dependent receptor.	0.736
ALJ46802.1	ALJ47995.1	Bovatus_02168	Bovatus_03388	SusD family protein.	Cellobiose 2-epimerase.	0.579
ALJ47616.1	ALJ47687.1	Bovatus_03007	Bovatus_03079	SusD family protein.	Hypothetical protein.	0.426
ALJ47616.1	ALJ47688.1	Bovatus_03007	Bovatus_03080	SusD family protein.	SusD family protein.	0.404
ALJ47616.1	ALJ47689.1	Bovatus_03007	Bovatus_03081	SusD family protein.	TonB dependent receptor.	0.474
ALJ47616.1	ALJ47995.1	Bovatus_03007	Bovatus_03388	SusD family protein.	Cellobiose 2-epimerase.	0.552
ALJ47687.1	ALJ46802.1	Bovatus_03079	Bovatus_02168	Hypothetical protein.	SusD family protein.	0.514
ALJ47687.1	ALJ47616.1	Bovatus_03079	Bovatus_03007	Hypothetical protein.	SusD family protein.	0.426
ALJ47687.1	ALJ47688.1	Bovatus_03079	Bovatus_03080	Hypothetical protein.	SusD family protein.	0.943
ALJ47687.1	ALJ47689.1	Bovatus_03079	Bovatus_03081	Hypothetical protein.	TonB dependent receptor.	0.935
ALJ47687.1	ALJ47995.1	Bovatus_03079	Bovatus_03388	Hypothetical protein.	Cellobiose 2-epimerase.	0.752
ALJ47687.1	ALJ48228.1	Bovatus_03079	Bovatus_03622	Hypothetical protein.	Hypothetical protein.	0.597
ALJ47687.1	ALJ48259.1	Bovatus_03079	Bovatus_03653	Hypothetical protein.	Hypothetical protein.	0.643
ALJ47688.1	ALJ47616.1	Bovatus_03080	Bovatus_03007	SusD family protein.	SusD family protein.	0.404
ALJ47688.1	ALJ47687.1	Bovatus_03080	Bovatus_03079	SusD family protein.	Hypothetical protein.	0.943
ALJ47688.1	ALJ47689.1	Bovatus_03080	Bovatus_03081	SusD family protein.	TonB dependent receptor.	0.955
ALJ47688.1	ALJ47995.1	Bovatus_03080	Bovatus_03388	SusD family protein.	Cellobiose 2-epimerase.	0.712
ALJ47688.1	ALJ48228.1	Bovatus_03080	Bovatus_03622	SusD family protein.	Hypothetical protein.	0.480

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

15

average node degree:

2.73

avg. local clustering coefficient:

0.919

expected number of edges:

12

PPI enrichment p-value:

0.191

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006266

DNA ligation

2 of 4

2.76

0.79

0.0379

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003910

DNA ligase (ATP) activity

2 of 4

2.76

0.98

0.0169

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:7956

ATP dependent DNA ligase domain, and PCNA complex

2 of 5

2.66

0.84

0.0298

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-5358606

Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)

2 of 6

2.58

0.95

0.0184

MAP-5358565

Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)

2 of 15

2.18

0.83

0.0297

MAP-5358508

Mismatch Repair

2 of 16

2.15

0.82

0.0297

MAP-1650814

Collagen biosynthesis and modifying enzymes

2 of 24

1.98

0.77

0.0353

MAP-1474290

Collagen formation

2 of 24

1.98

0.77

0.0353

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0233

DNA recombination

2 of 8

2.46

1.16

0.0075

KW-0234

DNA repair

2 of 23

2.0

0.85

0.0249

KW-0235

DNA replication

2 of 28

1.91

0.84

0.0249

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF04679

ATP dependent DNA ligase C terminal region

2 of 3

2.88

1.18

0.0073

PF04675

DNA ligase N terminus

2 of 4

2.76

1.18

0.0073

PF01068

ATP dependent DNA ligase domain

2 of 3

2.88

1.18

0.0073

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036599

DNA ligase, ATP-dependent, N-terminal domain superfamily

2 of 4

2.76

0.93

0.0209

IPR016059

DNA ligase, ATP-dependent, conserved site

2 of 3

2.88

0.93

0.0209

IPR012310

DNA ligase, ATP-dependent, central

2 of 4

2.76

0.93

0.0209

IPR012309

DNA ligase, ATP-dependent, C-terminal

2 of 3

2.88

0.93

0.0209

IPR012308

DNA ligase, ATP-dependent, N-terminal

2 of 4

2.76

0.93

0.0209

(more ...)

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