Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALJ47518.1 | ALJ48631.1 | Bovatus_02908 | Bovatus_04036 | Tol-pal system protein YbgF. | Colicin uptake protein TolQ. | 0.710 |
ALJ47518.1 | ALJ48632.1 | Bovatus_02908 | Bovatus_04037 | Tol-pal system protein YbgF. | Colicin uptake protein TolR. | 0.757 |
ALJ47518.1 | ALJ48633.1 | Bovatus_02908 | Bovatus_04038 | Tol-pal system protein YbgF. | Transport protein TonB. | 0.782 |
ALJ48631.1 | ALJ47518.1 | Bovatus_04036 | Bovatus_02908 | Colicin uptake protein TolQ. | Tol-pal system protein YbgF. | 0.710 |
ALJ48631.1 | ALJ48632.1 | Bovatus_04036 | Bovatus_04037 | Colicin uptake protein TolQ. | Colicin uptake protein TolR. | 0.983 |
ALJ48631.1 | ALJ48633.1 | Bovatus_04036 | Bovatus_04038 | Colicin uptake protein TolQ. | Transport protein TonB. | 0.938 |
ALJ48631.1 | ispD2 | Bovatus_04036 | Bovatus_04040 | Colicin uptake protein TolQ. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). | 0.799 |
ALJ48631.1 | lptB | Bovatus_04036 | Bovatus_03961 | Colicin uptake protein TolQ. | Lipopolysaccharide export system ATP-binding protein LptB. | 0.741 |
ALJ48631.1 | pdxJ | Bovatus_04036 | Bovatus_04035 | Colicin uptake protein TolQ. | Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.877 |
ALJ48631.1 | ppnK | Bovatus_04036 | Bovatus_04034 | Colicin uptake protein TolQ. | Putative inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.699 |
ALJ48631.1 | recG | Bovatus_04036 | Bovatus_04041 | Colicin uptake protein TolQ. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.731 |
ALJ48631.1 | tolC_2 | Bovatus_04036 | Bovatus_02746 | Colicin uptake protein TolQ. | Outer membrane protein TolC precursor. | 0.703 |
ALJ48631.1 | yajL | Bovatus_04036 | Bovatus_04039 | Colicin uptake protein TolQ. | Chaperone protein YajL. | 0.753 |
ALJ48632.1 | ALJ47518.1 | Bovatus_04037 | Bovatus_02908 | Colicin uptake protein TolR. | Tol-pal system protein YbgF. | 0.757 |
ALJ48632.1 | ALJ48631.1 | Bovatus_04037 | Bovatus_04036 | Colicin uptake protein TolR. | Colicin uptake protein TolQ. | 0.983 |
ALJ48632.1 | ALJ48633.1 | Bovatus_04037 | Bovatus_04038 | Colicin uptake protein TolR. | Transport protein TonB. | 0.964 |
ALJ48632.1 | ispD2 | Bovatus_04037 | Bovatus_04040 | Colicin uptake protein TolR. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). | 0.787 |
ALJ48632.1 | pdxJ | Bovatus_04037 | Bovatus_04035 | Colicin uptake protein TolR. | Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.838 |
ALJ48632.1 | ppnK | Bovatus_04037 | Bovatus_04034 | Colicin uptake protein TolR. | Putative inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.699 |
ALJ48632.1 | recG | Bovatus_04037 | Bovatus_04041 | Colicin uptake protein TolR. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.787 |
page 1 of 4