STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ48925.1Bacterial alpha-L-rhamnosidase. (893 aa)    
Predicted Functional Partners:
ALJ48924.1
GDSL-like Lipase/Acylhydrolase.
       0.763
ALJ46924.1
Bacterial alpha-L-rhamnosidase.
 
     0.727
ALJ45306.1
Bacterial alpha-L-rhamnosidase.
 
   
 0.664
csxA_6
Exo-beta-D-glucosaminidase precursor.
  
 
 0.631
ALJ47654.1
Hypothetical protein.
  
     0.618
ALJ47717.1
beta-D-glucuronidase.
 
     0.615
hypBA1
Non-reducing end beta-L-arabinofuranosidase.
 
  
 0.589
ALJ46926.1
Glycosyl hydrolases family 2, sugar binding domain.
 
     0.560
ALJ45342.1
Glycosyl hydrolases family 2, sugar binding domain.
 
     0.545
rhaB_2
Rhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family.
 
  
 0.539
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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