STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kanEAlpha-D-kanosaminyltransferase. (421 aa)    
Predicted Functional Partners:
ALJ49129.1
Glycosyl hydrolase family 57.
 
  
 0.970
ALJ49127.1
Hypothetical protein; Glycogen debranching enzyme N terminal.
 
 
 0.964
glgB
1,4-alpha-glucan branching enzyme GlgB.
 0.854
ALJ45957.1
Glycogen synthase.
  
   
 0.737
malP
Maltodextrin phosphorylase.
 
 
 0.694
ALJ49126.1
Rhomboid family protein.
       0.662
ALJ47565.1
Tetratricopeptide repeat protein.
 
     0.579
wbpI
UDP-2,3-diacetamido-2,3-dideoxy-D-glucuronate 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.575
cotSA_3
Spore coat protein SA.
 
  
 0.574
ALJ48200.1
Hypothetical protein.
 
    0.540
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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