STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ49159.1Hypothetical protein. (214 aa)    
Predicted Functional Partners:
spoIIIE
DNA translocase SpoIIIE.
  
  
 0.836
trxB
Glucosaminate ammonia-lyase.
  
  
 0.793
mreD
Hypothetical protein.
 
     0.708
lptD
LPS-assembly protein LptD.
  
   
 0.703
rnd
Ribonuclease D.
  
    0.700
ALJ49156.1
Hypothetical protein.
       0.683
ALJ48187.1
Hypothetical protein.
  
   
 0.675
ALJ49221.1
Hypothetical protein.
  
     0.656
purF_1
Amidophosphoribosyltransferase.
 
    0.653
rlmI
Ribosomal RNA large subunit methyltransferase I.
       0.624
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.