STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recD2_4ATP-dependent RecD-like DNA helicase. (1961 aa)    
Predicted Functional Partners:
ALJ48938.1
GDSL-like Lipase/Acylhydrolase.
  
     0.642
ALJ48924.1
GDSL-like Lipase/Acylhydrolase.
  
     0.634
rpsA_2
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
       0.566
ALJ47159.1
IPT/TIG domain protein.
  
     0.527
ALJ48221.1
IPT/TIG domain protein.
  
     0.521
ALJ47610.1
IPT/TIG domain protein.
  
     0.487
ALJ48235.1
Hypothetical protein.
  
     0.477
ALJ49401.1
Hypothetical protein; TaqI-like C-terminal specificity domain.
  
    0.473
paeR7IM
Modification methylase PaeR7I.
  
    0.473
ALJ48227.1
IPT/TIG domain protein.
  
     0.459
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.