STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ49453.1SusD family protein. (557 aa)    
Predicted Functional Partners:
ALJ49454.1
TonB dependent receptor.
 
     0.939
ALJ44756.1
TonB dependent receptor.
 
   0.811
ALJ47874.1
TonB dependent receptor.
 
 
   0.809
btuB_4
Vitamin B12 transporter BtuB precursor.
 
 
   0.806
ALJ47511.1
TonB dependent receptor.
 
 
   0.806
ALJ47679.1
TonB dependent receptor.
 
   0.805
ALJ47789.1
TonB dependent receptor.
 
 
   0.805
ALJ46945.1
TonB dependent receptor.
 
 
   0.802
ALJ49028.1
TonB dependent receptor.
 
 
   0.802
ALJ49192.1
TonB dependent receptor.
 
 
   0.802
Your Current Organism:
Bacteroides ovatus
NCBI taxonomy Id: 28116
Other names: ATCC 8483, B. ovatus, BCRC 10623, Bacteroides fragilis subsp. ovatus, CCRC 10623, CCRC:10623, CCUG 4943, CIP 103756, JCM 5824, NCTC 11153, Pasteurella ovata, Pseudobacterium ovatum, bacterium NLAE-zl-C11, bacterium NLAE-zl-C34, bacterium NLAE-zl-C500, bacterium NLAE-zl-C57, bacterium NLAE-zl-H304, bacterium NLAE-zl-H361, bacterium NLAE-zl-H59, bacterium NLAE-zl-H73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.