Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| OKY94345.1 | OKY96855.1 | BHV66_05840 | BHV66_00230 | Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.880 |
| OKY94345.1 | rimP | BHV66_05840 | BHV66_09470 | Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosome assembly cofactor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.436 |
| OKY94345.1 | rplA | BHV66_05840 | BHV66_00335 | Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.833 |
| OKY94345.1 | rplK | BHV66_05840 | BHV66_00330 | Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.918 |
| OKY94345.1 | rplM | BHV66_05840 | BHV66_08500 | Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.976 |
| OKY94345.1 | rplU | BHV66_05840 | BHV66_08765 | Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.952 |
| OKY94345.1 | rpmF | BHV66_05840 | BHV66_00225 | Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family. | 0.921 |
| OKY94345.1 | rpsC | BHV66_05840 | BHV66_06840 | Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.945 |
| OKY94345.1 | rpsF | BHV66_05840 | BHV66_04485 | Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.946 |
| OKY94345.1 | rpsP | BHV66_05840 | BHV66_02015 | Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS16 family. | 0.923 |
| OKY96855.1 | OKY94345.1 | BHV66_00230 | BHV66_05840 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.880 |
| OKY96855.1 | rimP | BHV66_00230 | BHV66_09470 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosome assembly cofactor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.808 |
| OKY96855.1 | rplA | BHV66_00230 | BHV66_00335 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.865 |
| OKY96855.1 | rplK | BHV66_00230 | BHV66_00330 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.898 |
| OKY96855.1 | rplM | BHV66_00230 | BHV66_08500 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.821 |
| OKY96855.1 | rplU | BHV66_00230 | BHV66_08765 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.806 |
| OKY96855.1 | rpmF | BHV66_00230 | BHV66_00225 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family. | 0.973 |
| OKY96855.1 | rpsC | BHV66_00230 | BHV66_06840 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.927 |
| OKY96855.1 | rpsF | BHV66_00230 | BHV66_04485 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.803 |
| OKY96855.1 | rpsP | BHV66_00230 | BHV66_02015 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS16 family. | 0.817 |
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