STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKY95623.1Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)    
Predicted Functional Partners:
OKY93259.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.883
OKY94907.1
Outer membrane protein assembly factor BamD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.791
OKY93727.1
Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.763
OKY93728.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.757
OKY93250.1
Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.751
OKY94263.1
Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.746
OKY94104.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.723
OKY93011.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.702
OKY94585.1
Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.674
OKY94107.1
Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.672
Your Current Organism:
Alistipes putredinis
NCBI taxonomy Id: 28117
Other names: A. putredinis, ATCC 29800, Bacillus putredinis, Bacteroides putredinis, CCUG 45780, CIP 104286, DSM 17216, JCM 16772, Pseudobacterium putredinis, Ristella putredinis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.