STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ37557.1Putative ABC transport system ATP-binding protein. (238 aa)    
Predicted Functional Partners:
SJZ37540.1
Putative ABC transport system permease protein.
 0.999
SJZ84176.1
Lipoprotein-releasing system permease protein.
  
 0.986
SKA12228.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.888
SJZ84628.1
Polar amino acid transport system substrate-binding protein.
 
 
 0.739
SJZ32475.1
Outer membrane lipoprotein-sorting protein.
   
 
 0.658
SKA08010.1
Outer membrane lipoprotein carrier protein.
   
 
 0.658
SJZ89204.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.640
SJZ49373.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.610
SKA12244.1
Outer membrane protein.
  
 
 
 0.548
SJZ79838.1
HlyD family secretion protein.
 
 
 0.542
Your Current Organism:
Fibrobacter intestinalis
NCBI taxonomy Id: 28122
Other names: ATCC 43854, F. intestinalis, Fibribacter intestinalis, strain NR9
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