STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ51938.1Radical SAM-linked protein/radical SAM family uncharacterized protein. (879 aa)    
Predicted Functional Partners:
SJZ51918.1
Flavorubredoxin.
 
     0.802
SJZ51991.1
Holin-like protein.
  
    0.572
SJZ52008.1
TIGR00659 family protein.
       0.554
SJZ97445.1
4-hydroxybenzoate polyprenyltransferase.
  
 
 0.503
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
    
  0.462
SJZ56168.1
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
   
 
 0.433
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
    
  0.420
SKA10026.1
UDP-N-acetylmuramate--alanine ligase.
    
  0.420
SJZ47813.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
    0.410
Your Current Organism:
Fibrobacter intestinalis
NCBI taxonomy Id: 28122
Other names: ATCC 43854, F. intestinalis, Fibribacter intestinalis, strain NR9
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