STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA08919.1Transglycosylase. (1055 aa)    
Predicted Functional Partners:
SJZ63330.1
Penicillin-binding protein 1A.
  
  
 
0.770
SKA08929.1
Hypothetical protein.
       0.737
SKA08942.1
Hypothetical protein.
       0.737
SKA05256.1
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
 
 
0.706
SJZ49259.1
SGNH hydrolase-like domain-containing protein, acetyltransferase AlgX.
  
     0.605
SKA15863.1
Fibro-slime domain-containing protein.
  
     0.540
SJZ55652.1
Tetratricopeptide repeat-containing protein.
  
     0.533
SJZ51854.1
Hypothetical protein.
  
     0.531
SJZ55741.1
Tetratricopeptide repeat-containing protein.
  
     0.512
SJZ61390.1
LysM domain-containing protein.
  
     0.485
Your Current Organism:
Fibrobacter intestinalis
NCBI taxonomy Id: 28122
Other names: ATCC 43854, F. intestinalis, Fibribacter intestinalis, strain NR9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.