STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA10668.1DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family. (271 aa)    
Predicted Functional Partners:
SKA13832.1
DNA methylase.
 
     0.976
SKA10692.1
Type III restriction enzyme.
 
    0.942
SKA04829.1
Type III restriction enzyme.
  
    0.779
SJZ93035.1
Type III restriction enzyme/adenine-specific DNA-methyltransferase.
  
     0.774
SKA10677.1
Hypothetical protein.
       0.773
SKA10684.1
Hypothetical protein.
       0.773
SJZ96655.1
Superfamily II DNA or RNA helicase.
  
     0.763
SKA12913.1
Type III restriction enzyme.
  
    0.742
SJZ81855.1
Adenine-specific DNA-methyltransferase.
  
     0.694
SJZ91066.1
Type III restriction enzyme.
  
    0.652
Your Current Organism:
Fibrobacter intestinalis
NCBI taxonomy Id: 28122
Other names: ATCC 43854, F. intestinalis, Fibribacter intestinalis, strain NR9
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