STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXO18420.1KEGG: pfc:PflA506_3771 6.0e-41 phospholipase, patatin family K07001. (319 aa)    
Predicted Functional Partners:
KXO17339.1
Outer membrane assembly lipoprotein YfiO.
  
 
 0.768
KXO17410.1
BNR/Asp-box repeat protein; KEGG: mmw:Mmwyl1_1672 3.9e-05 beta strand repeat-containing protein; Psort location: CytoplasmicMembrane, score: 9.86.
  
 
 0.734
KXO16808.1
Hypothetical protein.
  
 
 0.734
KXO18419.1
KEGG: pmz:HMPREF0659_A6304 1.3e-165 pseudouridine synthase, RluA family K06177; Psort location: Cytoplasmic, score: 9.97.
  
    0.670
KXO14405.1
Tetratricopeptide repeat protein; KEGG: tet:TTHERM_00391570 1.8e-08 DNA polymerase family B containing protein K02350; Psort location: Cytoplasmic, score: 8.96.
     
 0.586
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
  
  
 0.570
KXO17798.1
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 0.569
KXO17756.1
TraG family protein; Psort location: CytoplasmicMembrane, score: 10.00.
    
   0.560
KXO15490.1
TraG family protein; Psort location: CytoplasmicMembrane, score: 9.16.
    
   0.560
KXO15112.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.16.
    
   0.560
Your Current Organism:
Prevotella bivia
NCBI taxonomy Id: 28125
Other names: ATCC 29303, Bacteroides bivius, CCUG 9557, CIP 105105, DSM 20514, JCM 6331, LMG 6452, LMG:6452, NCTC 11156, P. bivia, VPI 6822, strain 653C, strain JCVIHMP010
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