STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXO17835.1igA Peptidase M64; Psort location: Cytoplasmic, score: 8.96. (434 aa)    
Predicted Functional Partners:
KXO15298.1
KEGG: nmh:NMBH4476_0274 2.9e-11 phosphotransferase family protein K07102; Psort location: Cytoplasmic, score: 8.96.
    
 0.691
KXO18038.1
LysM domain protein; KEGG: ccm:Ccan_15880 2.3e-13 putative lysozyme.
     
 0.579
KXO15224.1
KEGG: pit:PIN17_A1122 3.6e-37 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase-like protein; K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4); Psort location: Periplasmic, score: 9.76.
  
  
 0.543
KXO17262.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.539
KXO17518.1
KEGG: cyb:CYB_1515 7.4e-07 TPR repeat-containing protein kinase; K08884 serine/threonine protein kinase, bacterial.
 
  
 0.536
KXO15873.1
KEGG: pmz:HMPREF0659_A6104 2.7e-142 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259.
  
  
 0.528
KXO17263.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.518
KXO18310.1
Alpha amylase, catalytic domain protein; KEGG: pru:PRU_2700 2.4e-214 neopullulanase; Psort location: Periplasmic, score: 9.99; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.517
KXO18339.1
Hypothetical protein; KEGG: zga:zobellia_368 1.5e-258 susB; alpha-glucosidase.
  
  
 0.513
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.512
Your Current Organism:
Prevotella bivia
NCBI taxonomy Id: 28125
Other names: ATCC 29303, Bacteroides bivius, CCUG 9557, CIP 105105, DSM 20514, JCM 6331, LMG 6452, LMG:6452, NCTC 11156, P. bivia, VPI 6822, strain 653C, strain JCVIHMP010
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