STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXO17579.1Hypothetical protein; KEGG: bbb:BIF_01564 6.9e-98 Methyltransferase; Psort location: Cytoplasmic, score: 8.96. (425 aa)    
Predicted Functional Partners:
KXO18283.1
Hypothetical protein; KEGG: sgn:SGRA_1994 0.00030 uvrD; DNA-dependent ATPase I and helicase II K03657; Psort location: Cytoplasmic, score: 8.96.
  
     0.610
KXO16113.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.560
KXO18006.1
Hypothetical protein; KEGG: edi:EDI_341030 5.2e-15 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
 
     0.556
KXO18284.1
UvrD/REP helicase; KEGG: pmz:HMPREF0659_A6762 1.0e-284 UvrD/REP helicase; Psort location: Cytoplasmic, score: 9.97.
  
     0.547
KXO17580.1
Hypothetical protein; KEGG: pmz:HMPREF0659_A5050 4.1e-116 hypothetical protein; K08884 serine/threonine protein kinase, bacterial.
       0.539
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
  
  
 0.538
KXO14718.1
KEGG: pmz:HMPREF0659_A6052 8.9e-137 menC; o-succinylbenzoate synthase; Psort location: Cytoplasmic, score: 8.96.
  
     0.533
KXO17529.1
Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.515
rnpA
Putative ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
    0.483
KXO14416.1
KEGG: pmz:HMPREF0659_A6220 4.6e-140 glycosyltransferase, group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.473
Your Current Organism:
Prevotella bivia
NCBI taxonomy Id: 28125
Other names: ATCC 29303, Bacteroides bivius, CCUG 9557, CIP 105105, DSM 20514, JCM 6331, LMG 6452, LMG:6452, NCTC 11156, P. bivia, VPI 6822, strain 653C, strain JCVIHMP010
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