STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXO15944.1Rod shape-determining protein MreD; Psort location: CytoplasmicMembrane, score: 10.00. (166 aa)    
Predicted Functional Partners:
KXO15943.1
KEGG: apb:SAR116_0709 0.00014 cell shape-determining protein K03570; Psort location: OuterMembrane, score: 9.49.
  
    0.842
KXO15945.1
Putative penicillin-binding protein 2; KEGG: bsa:Bacsa_1389 1.5e-212 peptidoglycan glycosyltransferase K05515; Psort location: CytoplasmicMembrane, score: 7.88.
       0.839
KXO15942.1
Cell shape determining protein, MreB/Mrl family; KEGG: hpa:HPAG1_1318 2.5e-68 rod shape-determining protein MreB K03569; Psort location: Cytoplasmic, score: 9.97.
       0.806
KXO15941.1
MGS-like domain protein; KEGG: pdn:HMPREF9137_2093 5.8e-85 MGS-like domain-containing protein; K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase.
       0.719
KXO17876.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
  
     0.709
KXO18139.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.703
KXO17563.1
Tetratricopeptide repeat protein; KEGG: apb:SAR116_1534 5.4e-06 hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.679
KXO15946.1
Cell cycle protein, FtsW/RodA/SpoVE family; KEGG: kfl:Kfla_2886 6.2e-29 cell division protein FtsW; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the SEDS family.
  
    0.637
KXO17696.1
Hypothetical protein; KEGG: mml:MLC_5620 0.0014 pheRS; phenylalanyl tRNA synthetase beta chain; K01890 phenylalanyl-tRNA synthetase beta chain; Psort location: OuterMembrane, score: 9.49.
  
     0.636
KXO18261.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.632
Your Current Organism:
Prevotella bivia
NCBI taxonomy Id: 28125
Other names: ATCC 29303, Bacteroides bivius, CCUG 9557, CIP 105105, DSM 20514, JCM 6331, LMG 6452, LMG:6452, NCTC 11156, P. bivia, VPI 6822, strain 653C, strain JCVIHMP010
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