STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXO15476.1Hypothetical protein. (143 aa)    
Predicted Functional Partners:
KXO15475.1
Helicase protein; KEGG: ase:ACPL_5928 5.5e-107 F-box DNA helicase protein 1.
 
     0.936
KXO18300.1
Hypothetical protein.
 
     0.773
KXO15474.1
Hypothetical protein.
  
     0.767
KXO15191.1
Hypothetical protein.
  
     0.764
KXO15479.1
Hypothetical protein; KEGG: pmx:PERMA_A0059 0.0013 DNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) K03169; Psort location: Cytoplasmic, score: 8.96.
 
     0.760
KXO15497.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.747
KXO15473.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.744
KXO15512.1
Conjugative transposon protein TraQ family protein.
  
     0.712
KXO14943.1
Hypothetical protein; KEGG: ase:ACPL_5928 2.8e-06 F-box DNA helicase protein 1; Psort location: Cytoplasmic, score: 8.96.
 
     0.696
KXO15470.1
DNA binding domain, excisionase family; KEGG: tsu:Tresu_1607 0.0031 PTS IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component; Psort location: Cytoplasmic, score: 8.96.
  
     0.687
Your Current Organism:
Prevotella bivia
NCBI taxonomy Id: 28125
Other names: ATCC 29303, Bacteroides bivius, CCUG 9557, CIP 105105, DSM 20514, JCM 6331, LMG 6452, LMG:6452, NCTC 11156, P. bivia, VPI 6822, strain 653C, strain JCVIHMP010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.