close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXO15505.1Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00. (363 aa)    
Predicted Functional Partners:
KXO15504.1
Conjugative transposon protein TraI; KEGG: cth:Cthe_2605 0.0047 ATP synthase F1 subunit delta; K02113 F-type H+-transporting ATPase subunit delta.
 
   
 0.950
KXO15506.1
Conjugative transposon TraK protein.
   
 0.946
KXO15503.1
Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.922
KXO15508.1
Conjugative transposon TraM protein.
   
 0.904
KXO15509.1
Conjugative transposon TraN protein.
 
   
 0.884
KXO17771.1
Conjugative transposon TraK protein.
   
 0.792
KXO14970.1
Conjugative transposon TraK protein.
   
 0.792
KXO14965.1
Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.787
KXO17763.1
Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.786
KXO14968.1
Conjugative transposon protein TraI.
 
     0.785
Your Current Organism:
Prevotella bivia
NCBI taxonomy Id: 28125
Other names: ATCC 29303, Bacteroides bivius, CCUG 9557, CIP 105105, DSM 20514, JCM 6331, LMG 6452, LMG:6452, NCTC 11156, P. bivia, VPI 6822, strain 653C, strain JCVIHMP010
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.